Community

Researchers and analysts contributing to Microbial Discovery Forge projects.

22
contributors
78
projects
22
collections used
16
ORCID profiles
Paramvir S. Dehal (Lawrence Berkeley National Laboratory) 39 projects
ORCID 0000-0001-5810-2497

Projects

Metal Cross Resistance Acinetobacter Adp1 Explorer Amr Environmental Resistome Amr Cofitness Networks Bacdive Metal Validation Essential Genome Metal Fitness Atlas Lab Field Ecology Module Conservation Ecotype Env Reanalysis Aromatic Catabolism Network Adp1 Deletion Phenotypes Respiratory Chain Wiring Adp1 Triple Essentiality Field Vs Lab Fitness Webofmicrobes Explorer Essential Metabolome Paperblast Explorer Temporal Core Dynamics Metal Specificity Pangenome Openness Conservation Fitness Synthesis Conservation Vs Fitness Costly Dispensable Genes Core Gene Tradeoffs Pathway Capability Dependency Cofitness Coinheritance Env Embedding Explorer Enigma Contamination Functional Potential Amr Pangenome Atlas Counter Ion Effects Fw300 Metabolic Consistency Bacdive Phenotype Metal Tolerance Ecotype Analysis Amr Strain Variation Fitness Effects Conservation Cog Analysis Fitness Modules Amr Fitness Cost

Collections used

enigma_coral kbase_ke_pangenome kbase_msd_biochemistry kbase_uniref50 kescience_bacdive kescience_fitnessbrowser kescience_paperblast kescience_webofmicrobes nmdc_arkin phagefoundry_acinetobacter_genome_browser
Adam Arkin (U.C. Berkeley / Lawrence Berkeley National Laboratory) 8 projects
ORCID 0000-0002-4999-2931

Projects

Gene Function Ecological Agora Ibd Phage Targeting Genotype To Phenotype Enigma Enigma Sso Asv Ecology Truly Dark Genes Functional Dark Matter Prophage Ecology Phb Granule Ecology

Collections used

enigma_coral kbase_genomes kbase_ke_pangenome kbase_msd_biochemistry kbase_phenotype kbase_uniprot kbase_uniref100 kbase_uniref50 kbase_uniref90 kescience_alphafold kescience_bacdive kescience_fitnessbrowser kescience_paperblast kescience_pdb kescience_webofmicrobes nmdc_arkin phagefoundry_strain_modelling protect_genomedepot
Adam Arkin (University of California (Berkeley; ORCID 0000-0002-4999-2931)) 3 projects
ORCID 0000-0002-4999-2931

Projects

Enigma Carbon Census 1 Caulobacter Fur Lipida Loss Berdl Data Atlas

Collections used

enigma_coral kbase_ke_pangenome kbase_msd_biochemistry kbase_uniprot kescience_alphafold kescience_bacdive kescience_fitnessbrowser kescience_paperblast kescience_pdb kescience_webofmicrobes nmdc_arkin nmdc_ncbi_biosamples phagefoundry_acinetobacter_genome_browser phagefoundry_strain_modelling planetmicrobe_planetmicrobe protect_genomedepot
Christopher Neely 3 projects
ORCID 0000-0002-2620-8948

Author

Projects

Metabolic Capability Dependency Nmdc Community Metabolic Ecology Pangenome Pathway Geography

Collections used

kbase_ke_pangenome kescience_fitnessbrowser nmdc_arkin nmdc_ncbi_biosamples
Justin Reese (Lawrence Berkeley National Laboratory) 3 projects
ORCID 0000-0002-2170-2250

Projects

Prophage Amr Comobilization Ecotype Functional Differentiation Openness Functional Composition

Collections used

kbase_ke_pangenome kescience_fitnessbrowser
Adam P. Arkin — U.C. Berkeley / Lawrence Berkeley National Laboratory 2 projects
ORCID 0000-0002-4999-2931

Projects

Plant Microbiome Ecotypes Cf Formulation Design

Collections used

kbase_ke_pangenome kbase_msd_biochemistry kescience_bacdive kescience_fitnessbrowser nmdc_arkin phagefoundry_paeruginosa_genome_browser protect_genomedepot
Chris Mungall (LBNL, ORCID [0000-0002-6601-2165]) 2 projects
ORCID 0000-0002-6601-2165

— Lawrence Berkeley National Laboratory

Projects

Harvard Forest Warming Snipe Defense System

Collections used

kbase_ke_pangenome kescience_fitnessbrowser nmdc_arkin phagefoundry_strain_modelling
William J. Riehl 2 projects
ORCID 0000-0002-3405-2744

Author

Projects

Resistance Hotspots Pangenome Pathway Ecology

Collections used

kbase_genomes kbase_ke_pangenome kescience_fitnessbrowser
Adam Deutschbauer (Lawrence Berkeley National Laboratory) 1 project
ORCID 0000-0003-2728-7622

Projects

Metal Fitness Atlas

Collections used

kbase_ke_pangenome kescience_fitnessbrowser
Affiliation: U.C. Berkeley / Lawrence Berkeley National Laboratory 1 project

Projects

Gene Function Ecological Agora

Collections used

kbase_genomes kbase_ke_pangenome kbase_uniprot kbase_uniref100 kbase_uniref50 kbase_uniref90 kescience_alphafold kescience_bacdive kescience_fitnessbrowser kescience_pdb kescience_webofmicrobes nmdc_arkin
Aindrila Mukhopadhyay (Lawrence Berkeley National Laboratory, US Department of Energy) 1 project
ORCID 0000-0002-6513-7425

Projects

Counter Ion Effects

Collections used

kbase_ke_pangenome kescience_fitnessbrowser
Beril Admin (Lawrence Berkeley National Laboratory) 1 project
ORCID 0009-0007-0287-2979

Projects

Acinetobacter Adp1 Explorer

Collections used

kbase_ke_pangenome kbase_msd_biochemistry kbase_uniref50 kescience_fitnessbrowser phagefoundry_acinetobacter_genome_browser
Claude (AI co-scientist (Anthropic)) 1 project

Projects

Prophage Amr Comobilization

Collections used

kbase_ke_pangenome kescience_fitnessbrowser
Dileep Kishore 1 project

Projects

Pathway Capability Dependency

Collections used

kbase_ke_pangenome kescience_fitnessbrowser
Gazi S. Mahmud | ORCID: 0009-0006-4046-889X | Lawrence Berkeley National Laboratory 1 project

Projects

Alphafold Msa Annotation

Collections used

kbase_ke_pangenome kescience_alphafold kescience_fitnessbrowser
Janaka N. Edirisinghe (ORCID: [0000-0003-2493-234X](https://orcid.org/0000-0003-2493-234X)) (Data Science and Learning Division, Argonne National Laboratory, Lemont, IL, 60439, USA) 1 project

Projects

Annotation Gap Discovery

Collections used

kbase_ke_pangenome kbase_msd_biochemistry kescience_bacdive kescience_fitnessbrowser
Justin Reese ([0000-0002-2170-2250]) (LBL) 1 project
ORCID 0000-0002-2170-2250

Projects

Phage Defense Arsenal

Collections used

kbase_ke_pangenome
Mark Andrew Miller ([ORCID: 0000-0001-9076-6066]) 1 project
ORCID 0000-0001-9076-6066

Projects

Pseudomonas Carbon Ecology

Collections used

kbase_ke_pangenome kescience_fitnessbrowser
Markus de Raad (LBNL) — ORCID: [0000-0001-8263-9198] 1 project
ORCID 0000-0001-8263-9198

Projects

Lignin Community Enrichment

Collections used

kbase_ke_pangenome
ORCID: 0000-0002-4999-2931 1 project

Projects

Gene Function Ecological Agora

Collections used

kbase_genomes kbase_ke_pangenome kbase_uniprot kbase_uniref100 kbase_uniref50 kbase_uniref90 kescience_alphafold kescience_bacdive kescience_fitnessbrowser kescience_pdb kescience_webofmicrobes nmdc_arkin
Priya Ranjan (Oak Ridge National Laboratory) 1 project
ORCID 0000-0002-0357-1939

Projects

Pgp Pangenome Ecology

Collections used

kbase_ke_pangenome
Sierra Moxon (Lawrence Berkeley National Laboratory / KBase) 1 project
ORCID 0000-0002-8719-7760

Projects

Metabolic Capability Dependency

Collections used

kbase_ke_pangenome kescience_fitnessbrowser