Microbial Discovery Forge

Schema status

discovered

Curation status

discovered

Source

berdl-spark-connect://metrics.berdl.kbase.us:443

Citation & Attribution

Provider: KE Science

Schema Browser

Tables (2)

alphafold_entries alphafold_msa_depths

`alphafold_msa_depths`

Column	Type	Description

Projects Using This Collection

Gene Function Ecological Agora

Across the prokaryotic tree (GTDB r214; 293,059 genomes / 27,690 species), build a multi-resolution **innovation + acqui...

Metagenome-Prioritized Phage Cocktails for Crohn's Disease and IBD

Which bacterial pathobionts are **enriched, ubiquitous, and non-protective** in IBD, UC, and Crohn's disease patients — ...

Atlas Pages

data type

Literature, Structure, Reference, and Ontology

Reference layers that connect sequence-level observations to papers, structures, ontology terms, and external identifiers.

data collection

AlphaFold

AlphaFold protein structure metadata: UniProt→structure mapping and MSA depth (prediction quality). Joinable to any collection with UniProt/UniRef IDs.

opportunity

Rare-Earth RB-TnSeq Design

Design the first rare-earth fitness experiment by ranking candidate genes from cross-metal specificity, conservation, annotation, and structure evidence.

opportunity

Dark Gene Structure Prioritization

Prioritize dark gene families for mechanistic review by joining fitness, cofitness, annotation novelty, and AlphaFold structure signals.

opportunity

Low-Confidence Collection Curation

Reduce Atlas caveat load by upgrading high-value low-confidence collection pages with schemas, reuse examples, and missing-data labels.

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